期刊论文详细信息
BMC Genomics
Epigenetic signature of birth weight discordance in adult twins
Lene Christiansen1  Kaare Christensen3  Elmar W Tobi2  Jacob von Bornemann Hjelmborg1  Bastiaan T Heijmans2  Morten Frost4  Qihua Tan3 
[1] Epidemiology, Biostatistics and Biodemography, Institute of Public Health, University of Southern Denmark, J. B. Winsløws Vej 9B, DK-5000 Odense C, Denmark;Departments of Molecular Epidemiology and Medical Statistics, Leiden University Medical Center, Odense, Leiden, The Netherlands;Department of Clinical Genetics, Odense University Hospital, Odense, Denmark;Department of Endocrinology, Odense University Hospital, Odense, Denmark
关键词: DNA methylation;    Birth weight discordance;    Identical twins;   
Others  :  1089843
DOI  :  10.1186/1471-2164-15-1062
 received in 2014-06-25, accepted in 2014-11-20,  发布年份 2014
PDF
【 摘 要 】

Background

A low birth weight has been extensively related to poor adult health outcomes. Birth weight can be seen as a proxy for environmental conditions during prenatal development. Identical twin pairs discordant for birth weight provide an extraordinary model for investigating the association between birth weight and adult life health while controlling for not only genetics but also postnatal rearing environment. We performed an epigenome-wide profiling on blood samples from 150 pairs of adult monozygotic twins discordant for birth weight to look for molecular evidence of epigenetic signatures in association with birth weight discordance.

Results

Our association analysis revealed no CpG site with genome-wide statistical significance (FDR < 0.05) for either qualitative (larger or smaller) or quantitative discordance in birth weight. Even with selected samples of extremely birth weight discordant twin pairs, no significant site was found except for 3 CpGs that displayed age-dependent intra-pair differential methylation with FDRs 0.014 (cg26856578, p = 3.42e-08), 0.0256 (cg15122603, p = 1.25e-07) and 0.0258 (cg16636641, p = 2.05e-07). Among the three sites, intra-pair differential methylation increased with age for cg26856578 but decreased with age for cg15122603 and cg16636641. There was no genome-wide statistical significance for sex-dependent effects on intra-pair differential methylation in either the whole samples or the extremely discordant twins.

Conclusions

Genome-wide DNA methylation profiling did not reveal epigenetic signatures of birth weight discordance although some sites displayed age-dependent intra-pair differential methylation in the extremely discordant twin pairs.

【 授权许可】

   
2014 Tan et al.; licensee BioMed Central Ltd.

【 预 览 】
附件列表
Files Size Format View
20150128152405280.pdf 830KB PDF download
Figure 3. 85KB Image download
Figure 2. 83KB Image download
Figure 1. 51KB Image download
【 图 表 】

Figure 1.

Figure 2.

Figure 3.

【 参考文献 】
  • [1]Gluckman PD, Hanson MA, Buklijas T, Low FM, Beedle AS: Epigenetic mechanisms that underpin metabolic and cardiovascular diseases. Nat Rev Endocrinol 2009, 5:401-408.
  • [2]Hales CN, Barker DJ: The thrifty phenotype hypothesis. Br Med Bull 2001, 60:5-20.
  • [3]Langley SC, Jackson AA: Increased systolic blood pressure in adult rats induced by fetal exposure to maternal low protein diets. Clin Sci (Lond) 1994, 86:217-222.
  • [4]Bol V, Desjardins F, Reusens B, Balligand JL, Remacle C: Does early mismatched nutrition predispose to hypertension and atherosclerosis, in male mice? PLoS One 2010., 5(9) http://www.ncbi.nlm.nih.gov/pubmed/?term=Does+early+mismatched+nutrition+predispose+to+hypertension+and+atherosclerosis%2C+in+male+mice%3F webcite
  • [5]Frost M, Petersen I, Brixen K, Beck-Nielsen H, Holst JJ, Christiansen L, Højlund K, Christensen K: Adult glucose metabolism in extremely birthweight-discordant monozygotic twins. Diabetologia 2012, 55:3204-3212.
  • [6]Petersen I, Nielsen MM, Beck-Nielsen H, Christensen K: No evidence of a higher 10 year period prevalence of diabetes among 77,885 twins compared with 215,264 singletons from the Danish birth cohorts 1910–1989. Diabetologia 2011, 54:2016-2024.
  • [7]Iliadou A, Cnattingius S, Lichtenstein P: Low birthweight and Type 2 diabetes: a study on 11 162 Swedish twins. Int J Epidemiol 2004, 33:948-953.
  • [8]Wannamethee SG, Lawlor DA, Whincup PH, Walker M, Ebrahim S, Davey-Smith G: Birthweight of offspring and paternal insulin resistance and paternal diabetes in late adulthood: cross sectional survey. Diabetologia 2004, 47:12-18.
  • [9]Tan Q, Christiansen L, Thomassen M, Kruse TA, Christensen K: Twins for epigenetic studies of human aging and development. Ageing Res Rev 2013, 12:182-187.
  • [10]Mill J, Heijmans BT: From promises to practical strategies in epigenetic epidemiology. Nat Rev Genet 2013, 14:585-594.
  • [11]Czyz W, Morahan JM, Ebers GC, Ramagopalan SV: Genetic, environmental and stochastic factors in monozygotic twin discordance with a focus on epigenetic differences. BMC Med 2012, 10:93. BioMed Central Full Text
  • [12]Souren NY, Lutsik P, Gasparoni G, Tierling S, Gries J, Riemenschneider M, Fryns JP, Derom C, Zeegers MP, Walter J: Adult monozygotic twins discordant for intra-uterine growth have indistinguishable genome-wide DNA methylation profiles. Genome Biol 2013, 14(5):R44. BioMed Central Full Text
  • [13]Ollikainen M, Smith KR, Joo EJ, Ng HK, Andronikos R, Novakovic B, Abdul Aziz NK, Carlin JB, Morley R, Saffery R, Craig JM: DNA methylation analysis of multiple tissues from newborn twins reveals both genetic and intrauterine components to variation in the human neonatal epigenome. Hum Mol Genet 2010, 19:4176-4188.
  • [14]Tan H, Wen SW, Fung Kee Fung K, Walker M, Demissie K: The distribution of intra-twin birth weight discordance and its association with total twin birth weight, gestational age, and neonatal mortality. Eur J Obstet Gynecol Reprod Biol 2005, 121:27-33.
  • [15]Victoria A, Mora G, Arias F: Perinatal outcome, placental pathology, and severity of discordance in monochorionic and dichorionic twins. Obstet Gynecol 2001, 97:310-315.
  • [16]Engel SM, Joubert BR, Wu MC, Olshan AF, Håberg SE, Ueland PM, Nystad W, Nilsen RM, Vollset SE, Peddada SD, London SJ: Neonatal genome-wide methylation patterns in relation to birth weight in the Norwegian Mother and Child Cohort. Am J Epidemiol 2014, 179:834-842.
  • [17]Frank SA: Evolution in health and medicine Sackler colloquium: somatic evolutionary genomics: mutations during development cause highly variable genetic mosaicism with risk of cancer and neurodegeneration. Proc Natl Acad Sci U S A 2010, 107(Suppl 1):1725-1730.
  • [18]Bruder CE, Piotrowski A, Gijsbers AA, Andersson R, Erickson S, Diaz de Ståhl T, Menzel U, Sandgren J, von Tell D, Poplawski A, Crowley M, Crasto C, Partridge EC, Tiwari H, Allison DB, Komorowski J, van Ommen GJ, Boomsma DI, Pedersen NL, den Dunnen JT, Wirdefeldt K, Dumanski JP: Phenotypically concordant and discordant monozygotic twins display different DNA copy-number-variation profiles. Am J Hum Genet 2008, 82:763-771.
  • [19]Kaplan L, Foster R, Shen Y, Parry DM, McMaster ML, O’Leary MC, Gusella JF: Monozygotic twins discordant for neurofibromatosis 1. Am J Med Genet A 2010, 152A(3):601-606.
  • [20]Tan Q: Epigenetic epidemiology of complex diseases using twins. Med Epigenet 2013, 1:46-51.
  • [21]Maksimovic J, Gordon L, Oshlack A: SWAN: subset-quantile within array normalization for illumina infinium HumanMethylation450 BeadChips. Genome Biol 2012, 13(6):R44. BioMed Central Full Text
  • [22]Houseman EA, Accomando WP, Koestler DC, Christensen BC, Marsit CJ, Nelson HH, Wiencke JK, Kelsey KT: DNA methylation arrays as surrogate measures of cell mixture distribution. BMC Bioinformatics 2012, 13:86. BioMed Central Full Text
  • [23]Talens RP, Christensen K, Putter H, Willemsen G, Christiansen L, Kremer D, Suchiman HE, Slagboom PE, Boomsma DI, Heijmans BT: Epigenetic variation during the adult lifespan: cross-sectional and longitudinal data on monozygotic twin pairs. Aging Cell 2012, 11:694-703.
  • [24]Benjamini Y, Hochberg Y: Controlling the false discovery rate: a practical and powerful approach to multiple testing. J Roy Stat Soc B Met 1995, 57:289-300.
  文献评价指标  
  下载次数:19次 浏览次数:5次