期刊论文详细信息
BMC Biotechnology
Transgene autoexcision in switchgrass pollen mediated by the Bxb1 recombinase
Maria N Somleva1  Chang Ai Xu1  Kieran P Ryan1  Roger Thilmony2  Oliver Peoples1  Kristi D Snell1  James Thomson2 
[1] Metabolix, Inc., 21 Erie St., Cambridge, MA 02139, USA
[2] USDA-ARS-CIU, 800 Buchanan St., Albany, CA 94710, USA
关键词: Switchgrass;    Panicum virgatum L.;    Pollen-mediated gene flow;    Developmentally programmed transgene excision;    Bxb1 site-specific recombinase;    Autoexcision;   
Others  :  1084651
DOI  :  10.1186/1472-6750-14-79
 received in 2014-06-12, accepted in 2014-08-18,  发布年份 2014
PDF
【 摘 要 】

Background

Switchgrass (Panicum virgatum L.) has a great potential as a platform for the production of biobased plastics, chemicals and energy mainly because of its high biomass yield on marginal land and low agricultural inputs. During the last decade, there has been increased interest in the genetic improvement of this crop through transgenic approaches. Since switchgrass, like most perennial grasses, is exclusively cross pollinating and poorly domesticated, preventing the dispersal of transgenic pollen into the environment is a critical requisite for the commercial deployment of this important biomass crop. In this study, the feasibility of controlling pollen-mediated gene flow in transgenic switchgrass using the large serine site-specific recombinase Bxb1 has been investigated.

Results

A novel approach utilizing co-transformation of two separate vectors was used to test the functionality of the Bxb1/att recombination system in switchgrass. In addition, two promoters with high pollen-specific activity were identified and thoroughly characterized prior to their introduction into a test vector explicitly designed for both autoexcision and quantitative analyses of recombination events. Our strategy for developmentally programmed precise excision of the recombinase and marker genes in switchgrass pollen resulted in the generation of transgene-excised progeny. The autoexcision efficiencies were in the range of 22-42% depending on the transformation event and assay used.

Conclusion

The results presented here mark an important milestone towards the establishment of a reliable biocontainment system for switchgrass which will facilitate the development of this crop as a biorefinery feedstock through advanced biotechnological approaches.

【 授权许可】

   
2014 Somleva et al.; licensee BioMed Central Ltd.

【 预 览 】
附件列表
Files Size Format View
20150113163315915.pdf 1306KB PDF download
Figure 5. 81KB Image download
Figure 4. 81KB Image download
Figure 3. 56KB Image download
Figure 2. 80KB Image download
Figure 1. 115KB Image download
【 图 表 】

Figure 1.

Figure 2.

Figure 3.

Figure 4.

Figure 5.

【 参考文献 】
  • [1]Tilman D, Hill J, Lehman C: Carbon-negative biofuels from low-input high-diversity grassland biomass. Science 2006, 314:1598-1600.
  • [2]Lewandowski I, Scurlock JMO, Lindvall E, Christou M: The development and current status of perennial rhizomatous grasses as energy crops in the US and Europe. Biomass Bioenergy 2003, 25:335-361.
  • [3]Sanderson MA, Adler PR, Boateng AA, Casler MD, Sarath G: Switchgrass as a biofuels feedstock in the USA. Can J Plant Sci 2006, 86:1315-1325.
  • [4]Schmer MR, Vogel KP, Mitchell RB, Perrin RK: Net energy of cellulosic ethanol from switchgrass. Proc Natl Acad Sci U S A 2008, 105:464-469.
  • [5]McLaughlin S, Bouton J, Bransby D, Conger B, Ocumpaugh W: Developing Switchgrass as a Bioenergy Crop. In Perspectives on New Crops and New Uses. Edited by Janick J. Alexandria, VA: ASHS Press; 1999:282-299.
  • [6]Somleva MN, Peoples OP, Snell KD: PHA bioplastics, biochemicals, and energy from crops. Plant Biotechnol J 2013, 11:233-252.
  • [7]Somleva MN, Snell KD, Beaulieu JJ, Peoples OP, Garrison BR, Patterson NA: Production of polyhydroxybutyrate in switchgrass, a value-added co-product in an important lignocellulosic biomass crop. Plant Biotechnol J 2008, 6:663-678.
  • [8]Snell KD, Peoples OP: PHA bioplastic: a value-added coproduct for biomass biorefineries. Biofuels Bioprod Biorefin 2009, 3:456-467.
  • [9]Kausch AP, Hague J, Oliver M, Li Y, Daniell H, Mascia PN, Watrud L, Stewart CN Jr: Transgenic perennial biofuel feedstocks and strategies for bioconfinement. Biogeosciences 2010, 1:163-175.
  • [10]Wang Z-Y, Brummer EC: Is genetic engineering ever going to take off in forage, turf and bioenergy crop breeding? Ann Bot 2012, 110:1317-1325.
  • [11]Husken A, Prescher S, Schiemann J: Evaluating biological containment strategies for pollen-mediated gene flow. Environm Biosafety Res 2010, 9:67-73.
  • [12]Wang Y, Yau Y-Y, Perkins-Balding D, Thomson J: Recombinase technology: applications and possibilities. Plant Cell Rep 2011, 30:267-285.
  • [13]Kim AI, Ghosh P, Aaron MA, Bibb LA, Jain S, Hatfull GF: Mycobacteriophage Bxb1 integrates into the Mycobacterium smegmatis groEL1 gene. Molec Microbiol 2003, 50:463-473.
  • [14]Ghosh P, Kim AI, Hatfull GF: The orientation of mycobacteriophage Bxb1 integration is solely dependent on the central dinucleotide of attP and attB. Mol Cell 2003, 12:1101-1111.
  • [15]Yau Y, Wang Y, Thomson J, Ow D: Method for Bxb1-mediated site-specific integration in planta. Methods Mol Biol 2011, 701:147-166.
  • [16]Thomson J, Chan R, Smith J, Thilmony R, Yau Y-Y, Wang Y, Ow D: The Bxb1 recombination system demonstrates heritable transmission of site-specific excision in Arabidopsis. BMC Biotechnol 2012, 12:9-19. BioMed Central Full Text
  • [17]Blechl A, Lin J, Shao M, Thilmony R, Thomson J: The Bxb1 recombinase mediates site-specific deletion in transgenic wheat. Plant Mol Biol Rep 2012, 30:1357-1366.
  • [18]Fujita M, Horiuchi Y, Ueda Y, Mizuta Y, Kubo T, Yano K, Yamaki S, Tsuda K, Nagata T, Niihama M, Kato H, Kikuchi S, Hamada K, Mochizuki T, Ishimizu T, Iwai H, Tsutsumi N, Kurata N: Rice expression atlas in reproductive development. Plant Cell Phisiol 2010, 51:2060-2081.
  • [19]Thomson JG, Ow DW: Site-specific recombination systems for the genetic manipulation of eucaryotic genomes. Genesis 2006, 44:465-476.
  • [20]Kwit C, Moon HS, Warwick SI, Stewart CN Jr: Transgene introgression in crop relatives: molecular evidence and mitigation strategies. Trends Biotechnol 2011, 29:284-293.
  • [21]Moon H, Abercrombie J, Kausch A, Stewart CN Jr: Sustainable use of biotechnology for bioenergy feedstocks. Environ Manag 2010, 46:531-538.
  • [22]Gidoni D, Srivastava V, Carmi N: Site-specific excisional recombination strategies for elimination of undesirable transgenes from crop plants. In Vitro Cell Dev Biol – Plant 2008, 44:457-467.
  • [23]Lyznik LA, Gordon-Kamm W, Gao H, Scelonge C: Application of site-specific recombination systems for targeted modification of plant genomes. Transgenic Plant J 2007, 1:1-9.
  • [24]Skadsen RW, Sathish P, Federico ML, Abebe T, Fu J, Kaeppler HF: Cloning of the promoter for a novel barley gene, Lem1, and its organ-specific promotion of Gfp expression in lemma and palea. Plant Mol Biol 2002, 49:545-555.
  • [25]Somleva MN, Blechl AE: The barley Lem1 gene promoter drives expression specifically in outer floret organs at anthesis in transgenic wheat. Cereal Res Comm 2005, 33:665-671.
  • [26]Cook M, Thilmony R: The OsGEX2 gene promoter confers sperm cell expression in transgenic rice. Plant Mol Biol Rep 2012, 30:1138-1148.
  • [27]Zou J-T, Zhan X-Y, Wu H-M, Wang H, Cheung AY: Characterization of a rice pollen-specific gene and its expression. Am J Bot 1994, 81:552-561.
  • [28]Singh S, Ghosh P, Hatfull GF: Attachment site selection and identity in Bxb1 serine integrase-mediated site-specific recombination. PLoS Genet 2013, 9(5):1-14.
  • [29]Verweire D, Verleyen K, De Buck S, Claeys M, Angenon G: Marker-free transgenic plants through genetically programmed auto-excision. Plant Physiol 2007, 145:1220-1231.
  • [30]Shao M, Kumar S, Thomson JG: Precise excision of plastid DNA by the large serine recombinase Bxb1. Plant Biotechnol J 2014, 12:322-329.
  • [31]Luo K, Duan H, Zhao D, Zheng X, Deng W, Chen Y, Stewart CN Jr, McAvoy R, Jiang X, Wu Y, He A, Pei Y, Li Y: ‘GM-gene-deletor’: fused loxP-FRT recognition sequences dramatically improve the efficiency of FLP or CRE recombinase on transgene excision from pollen and seed of tobacco plants. Plant Biotechnol J 2007, 5:263-274.
  • [32]Mlynárová L, Conner AJ, Nap JP: Directed microspore-specific recombination of transgenic alleles to prevent pollen-mediated transmission of transgenes. Plant Biotechnol J 2006, 4:445-452.
  • [33]Rethmeier N, Seurinck J, Van Montagu M, Cornelissen M: Intron-mediated enhancement of transgene expression in maize is a nuclear, gene-dependent process. Plant J 1997, 12:895-899.
  • [34]Keravala A, Lee S, Thyagarajan B, Olivares EC, Gabrovsky VE, Woodard LE, Calos MP: Mutational derivatives of phiC31 integrase with increased efficiency and specificity. Mol Ther 2009, 17:112-120.
  • [35]Thilmony R, Guttman M, Chiniquy D, Blechl A: pGPro1, a novel binary vector for monocot promoter characterization. Plant Mol Biol Rep 2006, 24:57-69.
  • [36]Broothaerts W, Mitchell HJ, Weir B, Kaines S, Smith LMA, Yang W, Mayer JE, Rodriguez CR, Jefferson RA: Gene transfer to plants by diverse bacteria. Nature 2005, 433:629-633.
  • [37]Wang J, Jiang J, Oard J: Structure, expression and promoter activity of two polyubiquitin genes from rice (Oriza sativa L.). Plant Sci 2000, 156:201-211.
  • [38]Alexandrova KS, Denchev PD, Conger BV: In vitro development of inflorescences from switchgrass nodal segments. Crop Sci 1996, 36:175-178.
  • [39]Somleva M: Switchgrass (Panicum virgatum L.). In Agrobacterium Protocols. Volume 2 edition. Edited by Wang K. New York: Humana Press; 2006:65-74.
  • [40]Somleva MN, Tomaszewski Z, Conger BV: Agrobacterium-mediated genetic transformation of switchgrass. Crop Sci 2002, 42:2080-2087.
  • [41]Jefferson RA: Assaying chimeric genes in plants: the GUS gene fusion system. Plant Mol Biol Rep 1987, 5:387-405.
  文献评价指标  
  下载次数:74次 浏览次数:11次