期刊论文详细信息
Annals of Occupational and Environmental Medicine
DNA barcoding unmasks overlooked diversity improving knowledge on the composition and origins of the Churchill algal flora
Daniel C McDevit1  Gary W Saunders1 
[1]Centre for Environmental and Molecular Algal Research, Department of Biology, University of New Brunswick, Fredericton, NB E3B 5A3, Canada
关键词: Ulvophyceae;    Trans-Arctic exchange;    Thermogeographic model;    Rhodophyta;    Phaeophyceae;    Macroalgae;    Floristic survey;    DNA barcoding;    Barcoding biotas;    Arctic;   
Others  :  1085614
DOI  :  10.1186/1472-6785-13-9
 received in 2012-08-30, accepted in 2013-03-08,  发布年份 2013
PDF
【 摘 要 】

Background

Sampling expeditions to Churchill in the Canadian subarctic were completed with the aim of compiling a molecular-assisted survey of the macroalgal flora (seaweeds) for comparison to published accounts for this area, which are based on morphological identifications. Further, because the Churchill region was covered by ice until recently (~10,000 before present), the current algal flora has had to migrate from adjacent waters into that region. We used our DNA barcode data to predict the relative contribution of the North Atlantic and North Pacific floras (Likely Source Region) in repopulating the Churchill region following the most recent glacial retreat.

Results

We processed 422 collections representing ~50 morpho-species, which is the approximate number reported for this region, and generated DNA barcode data for 346 of these. In contrast to the morpho-species count, we recovered 57 genetic groups indicating overlooked species (this despite failing to generate barcode data for six of the ~50 morpho-species). However, we additionally uncovered numerous inconsistencies between the species that are currently listed in the Churchill flora (again as a result of overlooked species diversity, but combined with taxonomic confusion) and those identified following our molecular analyses including eight new records and another 17 genetic complexes in need of further study. Based on a comparison of DNA barcode data from the Churchill flora to collections from the contiguous Atlantic and Pacific floras we estimate that minimally 21% (possibly as much as 44%) of the Churchill flora was established by migration from the Pacific region with the balance of species arriving from the Atlantic (predominantly North American populations) following the last glacial retreat.

Conclusions

Owing to difficulties associated with the morphological identification of macroalgae, our results indicate that current comprehension of the Canadian Arctic flora is weak. We consider that morphology-based field-identifications are ill-advised in carrying out floristic and ecological surveys for macroalgae and that much of the current data, at least for the Canadian Arctic, should be used with caution. Our efforts to use DNA barcode data to identify the most Likely Source Regions for macroalgal species currently found in Churchill suggests that migration from both the Atlantic and the Pacific have played important roles in establishing the Canadian Arctic flora. This result has significance for understanding both the current and future biodiversity and biogeography of macroalgae in these waters.

【 授权许可】

   
2013 Saunders and McDevit; licensee BioMed Central Ltd.

【 预 览 】
附件列表
Files Size Format View
20150113174901610.pdf 3440KB PDF download
Figure 10. 12KB Image download
Figure 9. 91KB Image download
Figure 8. 34KB Image download
Figure 7. 48KB Image download
Figure 6. 34KB Image download
Figure 5. 24KB Image download
Figure 4. 37KB Image download
Figure 3. 24KB Image download
Figure 2. 42KB Image download
Figure 1. 22KB Image download
【 图 表 】

Figure 1.

Figure 2.

Figure 3.

Figure 4.

Figure 5.

Figure 6.

Figure 7.

Figure 8.

Figure 9.

Figure 10.

【 参考文献 】
  • [1]Kjellman FR: The Algae of the Arctic Sea. Botryckeriet, Stockholm: Kongl; 1883.
  • [2]Taylor WR: Marine Algae of the Northeastern Coast of North America; second ed. The University of Michigan Press. Ann Arbor: MI; 1957.
  • [3]Lee RKS: A catalogue of the marine algae of the Canadian Arctic. Natl Mus Can Nat Sci Publ Bot 1980, 9:1-83.
  • [4]Mathieson AC, Moore GE, Short FT: A floristic comparison of seaweeds from James Bay and three contiguous northeastern Canadian Arctic sites. Rhodora 2010, 112:396-434.
  • [5]Adey WH, Hayek L-AC: Elucidating marine biogeography with macrophytes: quantitative analysis of the north Atlantic supports the thermogeographic model and demonstrates a distinct subarctic region in the northwestern Atlantic. Northeast Nat 2011, 18(Monograph 8):1-128.
  • [6]Polyak L, Alley RB, Andrews JT, Brigham-Grette J, Cronin TM, Darby DA, Dyke AS, Fitzpatrick JJ, Funder S, Holland M, Jennings AE, Miller GH, O’Regan M, Savelle J, Serreze M, St. John K, White JWC, Wolff E: History of sea ice in the Arctic. Quaternary Sci Rev 2010, 29:1757-1778.
  • [7]Wilce RT: The marine algae of the Labrador peninsula and northeast Newfoundland (ecology and distribution). Nat Mus Can Bull 1959, 158:1-103.
  • [8]Taylor WR: Cryptogamic flora of the Arctic. II. Algae: non-planktonic. Bot Review 1954, 20:363-399.
  • [9]Lee RKS: General ecology of the Canadian Arctic benthic marine algae. Arctic 1973, 26:32-43.
  • [10]Wilce RT: The Arctic subtidal as a habitat for macrophytes. In Seaweed Ecology and Physiology. Edited by Lobban C, Harrison P. Cambridge: Cambridge University Press; 1994:89-92.
  • [11]Sears JR: NEAS keys to the benthic marine algae of the northeastern coast of North America from Long Island Sound to the Strait of Belle Isle. Fall River: Express Printing; 2002.
  • [12]Adey WH, Lindstrom SC, Hommersand MH, Müller KM: The biogeographic origin of Arctic endemic seaweeds: a thermogeographic view. J Phycol 2008, 44:1384-1394.
  • [13]Briggs JC: Marine centres of origin as evolutionary engines. J Biogeogr 2003, 30:1-18.
  • [14]Vermeij GJ, Roopnarine PD: The coming Arctic invasion. Science 2008, 231:780-781.
  • [15]Cánovas FG, Mota CF, Serrao EA, Pearson GA: Driving south: a multi- gene phylogeny of the brown algal family Fucaceae reveals relationships and recent drivers of a marine radiation. BMC Evol Biol 2011, 11:371. BioMed Central Full Text
  • [16]Lindstrom SC: The Bering Strait connection: dispersal and speciation in boreal macroalgae. J Biogeogr 2001, 28:243-251.
  • [17]Harrison MK, Crespi BJ: Phylogenetics of Cancer crabs (Crustacea: Decapoda: Brachyura). Mol Phylogenet Evol 1999, 12:186-199.
  • [18]Carr CM, Hardy SM, Brown TM, Macdonald TA, Hebert PDN: A tri-oceanic perspective: DNA barcoding reveals geographic structure and cryptic diversity in Canadian polychaetes. PLoS One 2011, 6(7):e22232.
  • [19]Palumbi SR, Kessing BD: Population biology of the trans-Arctic exchange: mtDNA sequence similarity between Pacific and Atlantic sea urchins. Evolution 1991, 45:1790-1805.
  • [20]Saunders GW: A DNA barcode examination of the red algal family Dumontiaceae in Canadian waters reveals substantial cryptic species diversity. 1. The foliose Dilsea-Neodilsea complex and Weeksia. Botany 2008, 86:773-789.
  • [21]McDevit DC, Saunders GW: A DNA barcode examination of the Laminariaceae (Phaeophyceae) in Canada reveals novel biogeographical and evolutionary insights. Phycologia 2010, 49:235-248.
  • [22]Gabrielson PW, Widdowson TB, Lindstrom SC: Keys to the benthic marine algae and seagrasses of British Columbia, southeast Alaska, Washington and Oregon. Phycol Contr No 7. PhycoID 2006, iv:209.
  • [23]Saunders GW, McDevit DC: Methods for DNA barcoding photosynthetic protists emphasizing the macroalgae and diatoms. In DNA barcodes: methods and protocols (Chapter 10), Methods in Molecular Biology (vol. 858). Edited by Kress WJ, Erickson DL. : Springer; 2012:207-222.
  • [24]Saunders GW, Kucera H: An evaluation of rbcL, tufA, UPA, LSU and ITS as DNA barcode markers for the marine green macroalgae. Cryptogamie Algol 2010, 31:487-528.
  • [25]Saunders GW: Applying DNA barcoding to red macroalgae: a preliminary appraisal holds promise for future applications. Phil Trans R Soc B 2005, 360:1879-1888.
  • [26]Drummond AJ, Ashton B, Cheung M, Heled J, Kearse M, Moir R, Stones-Havas S, Thierer T, Wilson A: Geneious v4.7. 2009. available from http://www.geneious.com/ webcite
  • [27]O’Kelly CJ, Kurihara A, Shipley TC, Sherwood AR: Molecular assessment of Ulva spp (Ulvophyceae, Chlorophyta) in the Hawaiian Islands. J Phycol 2010, 46:728-735.
  • [28]Kirkendale L, Saunders GW, Winberg P: A molecular survey of Ulva (Chlorophyta) in temperate Australia reveals enhanced levels of cosmopolitanism. J Phycol 2013, 49:69-81.
  • [29]Kim S-H, Kawai H: Taxonomic revision of Chordaria flagelliformis (Chordariales, Phaeophyceae) including novel use of the intragenic spacer region of rDNA for phylogenetic analysis. Phycologia 2002, 41:328-339.
  • [30]Rosenvinge LK: On the marine algae from north-east Greenland (N. of 76° N. lat.) collected by the “Danmark expedition.”. Meddelelser om Grönlands 1910, 43:93-133.
  • [31]Kogame K, Kurihara A, Cho GY, Lee KM, Sherwood AR, Boo SM: Petalonia tatewakii sp. nov. (Scytosiphonaceae, Phaeophyceae) from the Hawaiian Islands. Phycologia 2011, 50:563-573.
  • [32]Guiry MD, Guiry GM: AlgaeBase. World-wide electronic publication. Galway: National University of Ireland; 2012. http://www.algaebase.org/ webcite searched on 24 May 2012
  • [33]Lee RE: Phycology. 4th edition. New York: Cambridge University Press; 2008.
  • [34]Kucera H, Saunders GW: Assigning morphological variants of Fucus (Fucales, Phaeophyceae) in Canadian waters to recognized species using DNA barcoding. Botany 2008, 86:1065-1079.
  • [35]Coyer JA, Hoarau G, Van Schaik J, Luijckx P, Olsen JL: Trans-Pacific and trans-Arctic pathways of the intertidal macroalga Fucus distichus L. reveal multiple glacial refugia and colonizations from the North Pacific to the North Atlantic. J Biogeogr 2011, 38:756-771.
  • [36]Lane CE, Lindstrom S, Saunders GW: A molecular assessment of northeast Pacific Alaria species (Laminariales, Phaeophyceae) with reference to the utility of DNA barcoding. Mol Phylogenet Evol 2007, 44:634-648.
  • [37]Lindeberg MR, Lindstrom SC: Field guide to the seaweeds of Alaska. pp. [i-]iii-iv, 1–188, numerous col. photographs. Fairbanks: Alaska Sea Grant College Program; 2010.
  • [38]Kawai H, Sasaki H: Molecular phylogeny of the brown algal genera Akkesiphycus and Halosiphon (Laminariales), resulting in the circumscription of the new families Akkesiphycaceae and Halosiphonaceae. Phycologia 2000, 39:416-428.
  • [39]Milstein D, Saunders GW: DNA Barcoding of Canadian Ahnfeltiales (Rhodophyta) reveals a new species. Ahnfeltia borealis sp. nov Phycologia 2012, 51:247-259.
  • [40]Garbary D, Hansen GI, Scagel R: The marine algae of British Columbia and northern Washington: Division Rhodophyta (Red Algae), Class Florideophyceae, Orders Acrochaetiales and Nemaliales. 15. Syesis 1982, 151(Supplement 1):1-102.
  • [41]Hawkes MW, Scagel RF: The marine algae of British Columbia and northern Washington: division Rhodophyta (red algae), class Rhodophyceae, order Palmariales. Can J Bot 1986, 64:1148-1173.
  • [42]Athanasiadis A: Morphology and classification of the Ceramioideae (Rhodophyta) based on phylogenetic principles. Opera Bot 1996, 127:1-221.
  • [43]Bruce M, Saunders GW: Investigating species diversity, biogeography and taxonomy within the red algal genus Scagelia (Ceramiales, Rhodophyta). Bristol, RI: 49th Northeast Algal Symposium; 2010. Abstracts p. 11
  • [44]van Oppen MJH, Draisma SGA, Olsen JL, Stam WT: Multiple trans- Arctic passages in the red alga Phycodrys rubens: evidence from nuclear rDNA ITS sequences. Mar Biol 1995, 123:179-188.
  • [45]Savoie A, Saunders GW: Establishing species limits and phylogenetic relationships for northwest Atlantic Polysiphonia (Rhodophyta) using an integrative taxonomic approach. Seattle, WA: Joint Meeting of the Phycological Society of America, International Society of Protistologists & Northwest Algal Symposium; 2011. Abstract p. 11
  • [46]Maggs CA, Hommersand MH: Seaweeds of the British Isles. Volume 1 Rhodophyta, Part 3A Ceramiales. London: Natural History Museum; 1993. xv + 444 pp
  • [47]Perestenko LP: Red algae of the far-eastern seas of Russia. Komarov Botanical Institute. St. Petersburg: Russian Academy of Sciences; 1996. 330+[1] pp. “Olga” [a private printing company]
  • [48]Masuda M: A systematic study of the tribe Rhodomeleae (Rhodomelaceae, Rhodophyta). Journ Fac Sci Hokkaido Univ Ser V (Botany) 1982, 12:209-400. pls 1–28
  • [49]Lund S: The marine algae of East Greenland I. Taxonomic part. Meddelser om Grønland 1959, 156(1):1-247.
  • [50]Rosenvinge LK: The marine algae of Denmark. Contributions to their natural history. Part III. Rhodophyceae III. (Ceramiales). Kongelige Danske Videnskabernes Selskabs Skrifter, 7. Række, Naturvidenskabelig og Mathematisk Afdeling 1924, 7:285-487. Figures. 202–453, Plates V-VII, 2 maps
  • [51]Rueness J: DNA barcoding of select freshwater and marine red algae (Rhodophyta). Cryptogamie Algol 2010, 31:377-386.
  • [52]Tai V, Lindstrom SC, Saunders GW: Phylogeny of the Dumontiaceae (Gigartinales, Rhodophyta) and associated families based on small-subunit rDNA and internal transcribed spacer sequence data. J Phycol 2001, 37:184-196.
  • [53]Saunders GW, Lindstrom SC: A multigene phylogenetic assessment of the Dilsea/Neodilsea species complex (Dumontiaceae, Gigartinales) supports transfer of Neodilsea natashae to the genus Dilsea. Bot Mar 2011, 54:481-486.
  • [54]Le Gall L, Saunders GW: DNA barcoding is a powerful tool to uncover algal diversity: a case study of the Phyllophoraceae (Gigartinales, Rhodophyta) in the Canadian flora. J Phycol 2010, 46:374-389.
  • [55]Dunton K: Arctic biogeography: the paradox of the marine benthic fauna and flora. Trends Ecol Evol 1992, 7:183-189.
  文献评价指标  
  下载次数:146次 浏览次数:29次