期刊论文详细信息
Biotechnology for Biofuels | |
A highly efficient β-glucosidase from the buffalo rumen fungus Neocallimastix patriciarum W5 | |
Hsin-Liang Chen4  Yo-Chia Chen5  Mei-Yeh Jade Lu4  Jui-Jen Chang3  Hiaow-Ting Christine Wang3  Huei-Mien Ke2  Tzi-Yuan Wang4  Sz-Kai Ruan4  Tao-Yuan Wang4  Kuo-Yen Hung3  Hsing-Yi Cho1  Wan-Ting Lin1  Ming-Che Shih7  Wen-Hsiung Li6  | |
[1] Agricultural Biotechnology Research Center, Academia Sinica, Taipei, 115, Taiwan | |
[2] Program in Microbial Genomics, National Chung-Hsing University, Taichung, 402, Taiwan | |
[3] Genomics Research Center, Academia Sinica, Taipei, 115, Taiwan | |
[4] Biodiversity Research Center, Academia Sinica, Taipei, 115, Taiwan | |
[5] Department of Biological Science & Technology, National Pingtung University of Science & Technology, Neipu Hsiang, Pingtung, 91201, Taiwan | |
[6] Department of Ecology and Evolution, University of Chicago, Chicago, IL, 60637, USA | |
[7] Biotechnology Center, National Chung-Hsing University, Taichung, 402, Taiwan | |
关键词: Simultaneous saccharification and fermentation; Rumen fungi; Neocallimastix patriciarum; β-glucosidase; Endoglucanase; | |
Others : 798314 DOI : 10.1186/1754-6834-5-24 |
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received in 2011-11-21, accepted in 2012-04-19, 发布年份 2012 | |
【 授权许可】
2012 Chen et al; licensee BioMed Central Ltd.
【 预 览 】
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【 参考文献 】
- [1]Lynd LR, Weimer PJ, van Zyl WH, Pretorius IS: Microbial cellulose utilization: fundamentals and biotechnology. Microbiol Mol Biol Rev 2002, 66(3):506-577.
- [2]Theodorou MK, Longland AC, Dhanoa MS, Lowe SE, Trinci APJ: Growth of Neocallimastix sp. strain R1: on Italian ryegrass hay: removal of neutral sugars from plant cell walls. Appl Environ Microbiol 1989, 55(6):1363-1367.
- [3]Da-Silva R, Gomes E, Franco CML: Pectinases, hemicelulase e cellulases substrate, production application no processamento de alimentos. Bol SBCTA 1997, 31:249-250.
- [4]Wubah DA: Anaerobic zoosporic fungi associated with animals. In Biodiversity of Fungi: Inventory and Monotoring Methods. In . Edited by Mueller GM, Bills GF, Foster MS. Elsevier Academic Press, Burlington, MA; 2004:501-510.
- [5]Woodward J, Lima M, Lee NE: The role of cellulase concentration in determining the degree of synergism in the hydrolysis of microcrystalline cellulose. Biochem J 1982, 255(3):895-899.
- [6]Leclerc MAA, Ratomahenina R, Galzy P: Yeast β-glucosidases. Biotechnol Genet Eng Rev 1987, 5:269-295.
- [7]Bhat MK, Bhat S: Cellulose degrading enzymes and their potential industrial applications. Biotechnol Adv 1997, 15(3–4):583-620.
- [8]Shinoyama HTV, Ando A, Fujii T, Sasaki M, Doi Y, Yasui T: Enzymatic synthesis of useful alkyl-β-glucosides. Agri Biol Chem 1991, 55:1679-1681.
- [9]Saha BC, Freer SN, Bothast RJ: Production, purification, and properties of a thermostable beta-glucosidase from a color variant strain of Aureobasidium pullulans. Appl Environ Microbiol 1994, 60(10):3774-3780.
- [10]Henrissat B: A classification of glycosyl hydrolases based on amino acid sequence similarities. Biochem J 1991, 280(Pt 2):309-316.
- [11]Henrissat B: Glycosidase families. Biochem Soc Trans 1998, 26(2):153-156.
- [12]Dan S, Marton I, Dekel M, Bravdo BA, He S, Withers SG, Shoseyov O: Cloning, expression, characterization, and nucleophile identification of family 3, Aspergillus niger β-glucosidase. J Biol Chem 2000, 275(7):4973-4980.
- [13]Claeyssens M, Van Tilbeurgh H, Tomme P, Wood TM, McCrae I: Fungal cellulase systems. Comparison of the specificities of the cellobiohydrolases isolated from Penicillium pinophilum and Trichoderma reesei. Biochem J 1989, 261(3):819-826.
- [14]Eriksson KEL, Blanchette RA, Ander P: Microbial and enzymatic degradation of wood and wood components. Springer Verlag, Berlin/Heidelberg, Germany; 1990.
- [15]Uzcategui E, Johansson G, Ek B, Pettersson G: The 1,4-β-D-glucan glucanohydrolases from Phanerochaete chrysosporium. Reassessment of their significance in cellulose degradation mechanisms. J Biotechnol 1991, 21(1–2):143-159.
- [16]Trinci APJ, Davies DR, Gull K, Lawrence MI, Nielsen BB, Rickers A, Theodorou MK: Anaerobic fungi in herbivorous animals. Mycol Res 1994, 96(2):129-152.
- [17]Selinger LB, Forsberg CW, Cheng KJ: The rumen: a unique source of enzymes for enhancing livestock production. Anaerobe 1996, 2:263-284.
- [18]Duan CJ, Xian L, Zhao GC, Feng Y, Pang H, Bai XL, Tang JL, Ma QS, Feng JX: Isolation and partial characterization of novel genes encoding acidic cellulases from metagenomes of buffalo rumens. J Appl Microbiol 2009, 107(1):245-526.
- [19]Wang TY, Chen HL, Lu MY, Chen YC, Sung HM, Mao CT, Cho HY, Ke HM, Hwa TY, Ruan SK, Hung KY, Chen CK, Li JY, Wu YC, Chen YH, Chou SP, Tsai YW, Chu TC, Shih CC, Li WH, Shih MC: Functional characterization of cellulases identified from the cow rumen fungus Neocallimastix patriciarum W5 by transcriptomic and secretomic analyses. Biotechnol Biofuels 2011, 4:24. BioMed Central Full Text
- [20]Henrissat B, Callebaut I, Fabrega S, Lehn P, Mornon JP, Davies G: Conserved catalytic machinery and the prediction of a common fold for several families of glycosyl hydrolases. Proc Natl Acad Sci USA 1995, 92(15):7090-7094.
- [21]Makoto M, Isao O, Sakuzo F, Ichiro Y: Nucleotide sequences of Saccharomycopsis fibuligera genes for extracellular β-glucosidases as expressed in Saccharomyces cerevisiae. Appl Microbiol Biotechnol 1988, 54(12):3147-3155.
- [22]Wong WK, Ali A, Chan WK, Ho V, Lee NT: The cloning, expression and characterization of a cellobiase gene encoding a secretory enzyme from Cellulomonas biazotea. Gene 1998, 207:79-86.
- [23]Jeya M, Joo AR, Lee KM, Tiwari MK, Lee KM, Kim SH, Lee JK: Characterization of beta-glucosidase from a strain of Penicillium purpurogenum KJS506. Appl Microbiol Biotechnol 2010, 86(5):1473-1484.
- [24]Harnpicharnchai P, Champreda V, Sornlake W, Eurwilaichitr L: A thermotolerant β-glucosidase isolated from an endophytic fungi, Periconia sp., with a possible use for biomass conversion to sugars. Protein Express Purif 2009, 67(2):61-69.
- [25]Kim CH, Kim DS: Purification and specificity of a specific endo-beta-1,4-β -glucanase (Avicelase-II) resembling exo-cellobio-hydrolase from Bacillus circulans. Enzyme Microbiol Technol 1995, 17(3):248-254.
- [26]Meinke A, Damude HG, Tomme P, Kwan E, Kilburn DG, Miller RC, Warren RA, Gilkes NR: Enhancement of the endo-b-1,4-glucanase activity of an exocellobiohydrolase by deletion of a surface loop. J Biol Chem 1995, 270(9):4383-4386.
- [27]Tomme P, Warren RAJ, Gilkes NR: Cellulose hydrolysis by bacteria and fungi. Adv Microbiol Physiol 1995, 37:1-81.
- [28]Rubini MR, Dillon AJP, Kyaw CM, Faria FP, Poças-Fonseca MJ, Silva-Pereira I: Cloning, characterization and heterologous expression of the first Penicillium echinulatum cellulase gene. J Appl Microbiol 2009, 108(4):1187-1198.
- [29]Yeoh HH, Tan TK, Koh SK: Kinetic propeties of β-glucosidases from Aspergillus ornatus. Appl Microbiol Biotechnol 1986, 25:25-28.
- [30]Toonkool P, Metheenukul P, Sujiwattanarat P, Paiboon P, Tongtubtim N, Ketudat-Cairns M, Ketudat-Cairns J, Svasti J: Expression and purification of dalcochinase, a β-glucosidase from Dalbergia cochinchinensis Pierre, in yeast and bacterial hosts. Protein Expr Purif 2006, 48(2):195-204.
- [31]Shipkowski S, Brenchley JE: Characterization of an unusual cold-active β-glucosidase belonging to family 3 of the glycoside hydrolases from the psychrophilic isolate Paenibacillus sp. Strain C7. Appl Environ Microbiol 2005, 71(8):4225-4232.
- [32]Chauvaux S, Beguin P, Aubert JP, Bhat KM, Gow LA, Wood TM, Bairoch A: Calcium-binding affinity and calcium-enhanced activity of Clostridium thermocellum endoglucanase D. Biochem J 1990, 265(1):261-655.
- [33]Wallecha A, Mishra S: Purification and characterization of two β-glucosidases from a thermo-tolerant yeast Pichia etchellsii. Biochim Biophys Acta 2003, 1649(1):74-84.
- [34]Rouvinen J, Bergfors T, Teeri T, Knowles JK, Jones TA: Three-dimensional structure of cellobiohydrolase II from Trichoderma reesei. Science 1990, 249(4967):380-386.
- [35]Copa-Patino JL, Broda P: A Phanerochaete chrysosporium β-D-glucosidase/β-Dxylosidase with specificity for (1 → 3)- β-D-glucan linkages. Carbohydrate Res 1994, 253:265-275.
- [36]Ohmiya Y, Takeda T, Nakamura S, Sakai F, Hayashi T: Purification and properties of a wall-bound endo-1,4-b-glucanase from suspension-cultured poplar cells. Plant Cell Physiol 1995, 36:607-614.
- [37]Hsieh MC, Graham TL: Partial purification and characterization of a soybean β-glucosidase with high specific activity towards isoflavone conjugates. Phytochemistry 2001, 58(7):995-1005.
- [38]Champreda V, Kanokratana P, Sriprang R, Tanapongpipat S, Eurwilaichitr L: Purification, biochemical characterization, and gene cloning of a new extracellular thermotolerant and glucose tolerant maltooligosaccharide-forming alpha-amylase from an endophytic ascomycete Fusicoccum sp. BCC4124. Biosci Biotechnol Biochem 2007, 71(8):2010-2020.
- [39]Gifford JL, Walsh MP, Vogel HJ: Structures and metal-ion-binding properties of the Ca2+-binding helix–loop–helix EF-hand motifs. Biochem J 2007, 405:199-221.
- [40]Ho CY, Chang JJ, Huang YR, Wu YC, Li WH, Shih MC, Huang CC: Isolation and characterization of a flavor production kefir yeast Kluyveromyces marxianus KY3: a potential strain for developing co-cultural consolidated bioprocess. Biomass Bioenergy 2011. revised
- [41]Lynd LR, van Zyl WH, McBride JE, Laser M: Consolidated bioprocessing of cellulosic biomass: an update. Curr Opin Biotechnol 2005, 16(5):577-583.
- [42]Laemmli UK: Cleavage of structural proteins during the assembly of the head of bacteriophage T4. Nature 1970, 227(5259):680-685.
- [43]Feng Y, Duan CJ, Pang H, Mo XC, Wu CF, Yu Y, Hu YL, Wei J, Tang JL, Feng JX: Cloning and identification of novel cellulase genes from uncultured microorganisms in rabbit cecum and characterization of the expressed cellulases. Appl Microbiol Biotechnol 2007, 75(2):319-328.