Bioinformatics approach of salt tolerance gene in mangrove plant Rhizophora stylosa

International Conference on Computing and Applied Informatics 2016

物理学;计算机科学

Basyuni, M.^1 ; Sumardi^2

Department of Forestry, Faculty of Forestry, University of Sumatera Utara, J1. Tri Dharma Ujung No. 1 Medan, North Sumatera

20155, Indonesia^1

Faculty of Pharmacy, Tjut Nyak Dhien University, Jl. Rasmi No. 28, Medan

20123, Indonesia^2

关键词: Cu/Zn-SOD;    Phylogenetic trees;    Protein kinase;    Reverse transcriptases;    Salt tolerance;    Salt tolerant;    Subcellular localizations;   

Others  :  https://iopscience.iop.org/article/10.1088/1742-6596/801/1/012012/pdf
DOI  :  10.1088/1742-6596/801/1/012012

学科分类：计算机科学（综合）

来源: IOP

【 摘 要 】

This study descibes bioinformatics approach on the analyze of the salt tolerance genes in mangrove plant, Rhizophora stylosa on DDBJ/EMBL/GenBank as well as similarity, phylogenetic, potential peptide, and subcellular localization. The DNA sequence between salt tolerance gene from R. stylosa exhibited 42-11% between themselves The target peptide value of mitochondria varied from 0.163 to 0.430, indicated it was possible to exist. These results suggested the importance of understanding the diversity and functional of properties of the different amino acids in mangrove OSC genes. To clarify the relationship among the salt-tolerant genes in R. stylosa, a phylogenetic tree was constructed. The phylogenetic tree shows that there are three clusters, first branch of Cu/Zn SOD and reverse transcriptase genes, the second branch consists of the majority genes and the last group was MAP3K alpha protein kinase only. The present study, therefore, suggested that salt tolerance genes form distinct clusters in the tree.